They're the same scene lol.
Honestly a lot of what we know about Shinji's feelings towards Shirou is just told to us by Sakura in like the first 3 days of the game.
"nii-san's mad at you senpai he thinks you're still fighting" "nii-san actually likes you more than anyone else senpai he just can't show it" "don't get too mad at him senpai, you're his only friend" wow thanks Wakame Whisperer